Benthic Habitat and Zone Maps of Puerto Rico 1999 - Prepared by Visual Interpretation from Remote Sensing Imagery Collected by NOAA, 1999

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Frequently anticipated questions:


What does this data set describe?

Title:
Benthic Habitat and Zone Maps of Puerto Rico 1999 - Prepared by Visual Interpretation from Remote Sensing Imagery Collected by NOAA, 1999
Abstract:
There are 208 habitat and zone maps of Puerto Rico and is major islands. This project is a cooperative effort between the National Ocean Service, National Centers for Coastal Ocean Science, Center for Coastal Monitoring and Assessment, the United States Geological Survey, the National Park Service, and the National Geophysical Data Center, to produce benthic habitat maps and georeferenced imagery for Puerto Rico and the U.S. Virgin Islands. This project was conducted in support of the U.S. Coral Reef Task Force.

Twenty-one distinct benthic habitat types within eight zones were mapped directly into a GIS system using visual interpretation of orthorectified aerial photographs. Benthic features were mapped that covered an area of 1600 km^2. In all, 49 km^2 of unconsolidated sediment, 721 km^2 of submerged vegetation, 73 km^2 of mangroves, and 756 km^2 of coral reef and colonized hardbottom were mapped.

  1. How should this data set be cited?

    Department of Commerce (DOC), National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Program, 20011201, Benthic Habitat and Zone Maps of Puerto Rico 1999 - Prepared by Visual Interpretation from Remote Sensing Imagery Collected by NOAA, 1999: NOAA's Ocean Service, National Centers for Coastal Ocean Science (NCCOS), Silver Spring, MD.

    Online Links:

    This is part of the following larger work.

    Department of Commerce (DOC), National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Program, 20011201, Benthic Habitat Maps of Puerto Rico and the U.S. Virgin Islands Prepared by Visual Interpretation from Remote Sensing Imagery Collected by NOAA Year 1999: NOAA's Ocean Service, National Centers for Coastal Ocean Science (NCCOS), Silver Spring, MD.

    Online Links:

  2. What geographic area does the data set cover?

    West_Bounding_Coordinate: -68.01
    East_Bounding_Coordinate: -65.22
    North_Bounding_Coordinate: 18.59
    South_Bounding_Coordinate: 17.82

  3. What does it look like?

  4. Does the data set describe conditions during a particular time period?

    Beginning_Date: 1999
    Ending_Date: 2001
    Currentness_Reference:
    Ground condition at date photos were taken (Feb, Mar, and Dec 1999). Maps reflect only the conditions at the time of the photos.

  5. What is the general form of this data set?

    Geospatial_Data_Presentation_Form: PDF

  6. How does the data set represent geographic features?

    1. How are geographic features stored in the data set?

    2. What coordinate system is used to represent geographic features?

      Horizontal positions are specified in geographic coordinates, that is, latitude and longitude. Latitudes are given to the nearest 0.1. Longitudes are given to the nearest 0.1. Latitude and longitude values are specified in Decimal Degrees.

      The horizontal datum used is North American Datum of 1983.
      The ellipsoid used is Geodetic Reference System 80.
      The semi-major axis of the ellipsoid used is 6378137.0000000.
      The flattening of the ellipsoid used is 1/298.26.

  7. How does the data set describe geographic features?

    p_rico.dbf
    Shapefile Attribute Table (Source: None)

    PolygonID
    Unique ID for each GIS Polygon (Source: Software defined)

    Numeric field

    Area
    Area of each polygon in acres (Source: GIS software calculation)

    Range of values
    Minimum:604
    Maximum:3557492

    Id
    ID assigned to each detailed habitat type (Source: Benthic Habitats of Puerto Rico and the U.S. Virgin Islands)

    ValueDefinition
    11Unconsolidated Sediments/Sand
    12Unconsolidated Sediments/Mud
    31Coral Reef and Hardbottom/Colonized Hardbottom/Linear Reef
    32Coral Reef and Hardbottom/Colonized Hardbottom/Spur and Groove
    33Coral Reef and Hardbottom/Colonized Hardbottom/Individual Patch Reef
    34Coral Reef and Hardbottom/Colonized Hardbottom/Aggregated Patch Reef
    35Coral Reef and Hardbottom/Colonized Hardbottom/Scattered Coral/Rock in Unconsolidated Sediment
    36Coral Reef and Hardbottom/Colonized Hardbottom/Colonized Pavement
    37Coral Reef and Hardbottom/Colonized Hardbottom/Colonized Bedrock
    38Coral Reef and Hardbottom/Colonized Hardbottom/Colonized Pavement with Sand Channels
    41Coral Reef and Hardbottom/Uncolonized Hardbottom/Reef Rubble
    44Coral Reef and Hardbottom/Uncolonized Hardbottom/Uncolonized Bedrock
    51Other Delineations/Land
    52Other Delineations/Mangrove
    53Other Delineations/Artificial
    55Other Delineations/Unknown
    211Submerged Vegetation/Seagrass/Continuous Seagrass/90- less than 100%
    2121Submerged Vegetation/Seagrass/Patchy/70- less than 90%
    2122Submerged Vegetation/Seagrass/Patchy/50- less than 70%
    2123Submerged Vegetation/Seagrass/Patchy/30- less than 50%
    2124Submerged Vegetation/Seagrass/Patchy/10- less than 30%
    2221Submerged Vegetation/Macroalgae/Patchy/50- less than 90%
    2222Submerged Vegetation/Macroalgae/Patchy/10- less than 50%

    Descriptor
    Field containing concatenated habitat data (Source: Benthic Habitats of Puerto Rico and the U.S. Virgin Islands)

    Concatenated field of detailed habitats from ArcView GIS software

    Zone
    Name of benthic zone for each GIS polygon (Source: Benthic Habitats of Puerto Rico and the U.S. Virgin Islands)

    Character Field

    Habitat
    Name of most general level benthic habitat for each GIS polygon (Source: Benthic Habitats of Puerto Rico and the U.S. Virgin Islands)

    Character Field

    Type
    Subset of habitat (Source: ArcView Habitat Digitizer Extension)

    Character Field

    Modifier1
    Subset of type (Source: ArcView Habitat Digitizer Extension)

    Character Field

    Modifier2
    Subset of Modifier1 (Source: ArcView Habitat Digitizer Extension)

    Character Field

    Modifier3
    Subset of Modifier2 (Source: ArcView Habitat Digitizer Extension)

    Character Field

    Representa
    Characteristic Species found in each GIS polygon (Source: Benthic Habitats of Puerto Rico and the U.S. Virgin Islands)

    Character Field


Who produced the data set?

  1. Who are the originators of the data set? (may include formal authors, digital compilers, and editors)

  2. Who also contributed to the data set?

    Puerto Rico Department of Natural and Environmental Resources, University of Puerto Rico, the United States Geological Survey, the National Park Service, Virgin Islands Department of Planning and Natural Resources: Fish and Wildlife Division, University of Virgin Islands, Cons. Data Center, The Nature Conservancy, SeaGrant, and other local and regional experts for input and review.

  3. To whom should users address questions about the data?

    National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Program
    Biogeography Team Leader, Mapping Manager
    1305 East West Highway
    Silver Spring, MD 20910

    301-713-3028 (voice)
    301-713-4388 (FAX)
    steve.rohmann@noaa.gov


Why was the data set created?

The National Ocean Service is conducting research to digitally map biotic resources and coordinate a long-term monitoring program that can detect and predict change in U.S. coral reefs, and their associated habitats and biological communities.


How was the data set created?

  1. From what previous works were the data drawn?

    Classification Scheme for Benthic Habitats: Puerto Rico and U.S VI (source 1 of 3)
    NOAA Caribbean Fishery Management Council, Dr. Ken Lindeman, Environmental Defense, and Program, NOS Biogeography , 2000, Classification Scheme for Benthic Habitats: Puerto Rico and the U.S. Virgin Islands: NOAA's Ocean Service, National Centers for Coastal Ocean Science (NCCOS), Silver Spring, MD.

    Type_of_Source_Media: Report
    Source_Contribution:
    This document identifies the zone and habitat types attributed in this data set.

    Habitat Digitizer (source 2 of 3)
    Buja, Ken, 2001, ArcView Habitat Digitizer Extension v 3.1: NOAA's Ocean Service, National Centers for Coastal Ocean Science (NCCOS), Silver Spring, MD.

    Online Links:

    Type_of_Source_Media: computer program
    Source_Contribution:
    This ArcView extension was used to digitize and attribute benthic zones and habitats for Puerto Rico and the U.S. Virgin Islands.

    NGS aerial photos (source 3 of 3)
    National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Geodetic Survey (NGS), 1999, Color Aerial Photography: NOAA's Ocean Service, National Centers for Coastal Ocean Science (NCCOS), Silver Spring, MD.

    Online Links:

    Other_Citation_Details:
    These photographs (scanned to a 2.4 by 2.4 meter pixel size, but varies with individual islands) were mosaiced and georeferenced by NOAA's National Geophysical Data Center (NGDC), in Boulder, CO.
    Type_of_Source_Media: aerial photography and scanned photographs
    Source_Scale_Denominator: 48000
    Source_Contribution:
    Benthic features were interpreted and mapped from NGS aerial photos of Puerto Rico.

  2. How were the data generated, processed, and modified?

    Date: 2000 (process 1 of 1)
    Benthic habitat maps were digitized by delineating habitat boundaries from georeferenced imagery loaded into ArcView 3.2 GIS software with the Image Analysis and NOAA Coral Reef Habitat Digitizing extensions both activated. On-screen digitizing was conducted with the minimum mapping unit (MMU) set to 1 acre and the image scale at 1:6000.

    During the digitizing process, image stretches and manipulating image contrast, brightness and color balance were performed in the ArcView Image Analysis Extension to enhance features in the processed imagery. Additional collateral information including previously completed habitat maps, NOS nautical charts, and other descriptive references dealing with benthic and coastal habitats of Puerto Rico and the U.S. Virgin Islands was used to assist with image interpretation.

    A first draft map was completed and features in the imagery where uncertainties existed, due to confusing or difficult to interpret signatures, were identified for future ground validation effort. An ArcView GIS point theme was generated with points positioned on the features of uncertain habitat type or along transects though gradients between habitat types. The GIS points were converted to GPS waypoints using Trimble Pathfinder Software and were navigated to in the field using a Trimble GeoExplorer 3 GPS data logger.

    A benthic habitat characterization was conducted at each site by snorkeling, free diving, or via observations from the surface where water depth and clarity permitted. GPS data were collected at each location and site ID, depth, habitat type, zone and the method used to make the assessment were recorded. The ground validation data were incorporated into the second draft of each map.

    Person who carried out this activity:

    Curtis Kruer
    Independent contractor
    P.O. Box 753
    Sheridan, MT 59749

    406-842-5099 (voice)
    crkruer@aol.com

  3. What similar or related data should the user be aware of?


How reliable are the data; what problems remain in the data set?

  1. How well have the observations been checked?

    The purpose of this study was to determine the relative accuracy of maps generated from on-screen digitizing using the ArcView Habitat Digitizer Extension, to those produced by digitizing directly from hard copy photos using a stereoplotter. Thematic accuracy of the Puerto Rico and U.S. Virgin Islands habitat maps was evaluated for the three most general habitat categories: unconsolidated sediment, submerged vegetation, and coral reef/hard bottom. Accuracy tests were conducted at two locations within the project area that included the full complement of habitat types, depth ranges, and water conditions representative of Puerto Rico and the U.S. Virgin Islands. For this reason, the accuracy of maps measured at these two locations is assumed to be representative of map accuracy elsewhere in the project area. This approach, which focused in two small areas, enabled a statistically robust evaluation of thematic accuracy to be conducted without the logical difficulty of collecting data for accuracy assessment over the entire project area.

    The two test sites chosen were located at Buck Island National Monument, St. Croix, and La Parguera, Puerto Rico. A stratified sampling protocol was used during which sample sites were pre-selected so that overall thematic accuracy of the three major habitat types across the range of depths and water conditions found in the field could be evaluated. Each preselected site was navigated to using a real time Differential Global Positioning System (DGPS) and habitat data was acquired.

    The Buck Island accuracy assessments tests showed that the ability to generate benthic habitat maps with an overall accuracy of 93.6 percent (Kappa 0.90) for on-screen digitizing and 87.8 percent (Kappa 0.82) for maps digitized directly from stereo pairs. Overall accuracy in the Parguera area was determined to be 93.6 percent (Kappa 0.93).

  2. How accurate are the geographic locations?

    The Minimum Mapping Unit (MMU) restriction was set to one acre when digitizing was conducted at 1:6000 scale. Polygons were digitized directly from georegistered orthophotos with spatial accuracy between 1 and 9 meters. These maps represent conditions at the time the aerial photographs were obtained. When considering horizontal map accuracy, it is important to keep in mind that the ocean floor is a dynamic environment. Physical factors such as water currents and hurricanes and biological factors such as seasonal growth and die-off, affect the distribution and stability of benthic habitats in this environment.

  3. How accurate are the heights or depths?

  4. Where are the gaps in the data? What is missing?

    NOAA supplied georeferenced imagery to an independent contractor. Delineation of all habitat boundaries was conducted with the image scale at 1:6,000. Experimentation indicated that digitizing at this scale optimizes the tradeoff between positional accuracy of lines and time spent digitizing. All polygons were digitized at this scale except when subtle habitat boundaries were not easily discernable at 1:6000 and zooming out to a more broad scale was required to place boundaries correctly. In this case, digitizing generally took place at a scale of approximately 1:10000. Digitizing at a uniform scale ensures that the level of detail produced by the photointerpreter is consistent throughout the project.

    The Minimum Mapping Unit (MMU) for identifying habitats or features was 1 acre for visual photointerpretation. The software utilized in this project was designed to alert the photointerpreter each time a polygon was drawn smaller than the MMU. When this occurred the photointerpreter has the choice of whether to include the polygon in the data set or not.

  5. How consistent are the relationships among the observations, including topology?

    Individual color aerial photographs were georeferenced and mosaiced. During the digitizing process, image stretches and manipulating image contrast, brightness and color balance were performed in the ArcView Image Analysis Extension to enhance features in the processed imagery. Additional, collateral information including previously completed habitat maps, NOS nautical charts, and other descriptive references dealing with benthic and coastal habitats of Puerto Rico and the U.S. Virgin Islands was used to assist with image interpretation.

    GIS topologic quality was established by executing ArcView extension routines that check for: overlapping polygons, multipart polygons, sliver polygons and void polygons. Additionally, checks for adjacent polygons with the same habitat attributes were completed. All errors were identified and corrected. This file is believed to be logically consistent.


How can someone get a copy of the data set?

Are there legal restrictions on access or use of the data?

Access_Constraints: None
Use_Constraints: Not for navigation

  1. Who distributes the data set? (Distributor 1 of 1)

    National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Program
    Biogeography Team Leader, Mapping Manager
    1305 East West Highway
    Silver Spring, MD 20910

    301-713-3028 (voice)
    301-713-4388 (FAX)
    steve.rohmann@noaa.gov

  2. What's the catalog number I need to order this data set?

    Downloadable Data

  3. What legal disclaimers am I supposed to read?

    The National Oceanic and Atmospheric Administration (NOAA) National Centers for Coastal Ocean Science (NCCOS) produced this data CD-ROM. NCCOS Biogeography Program does not guarantee the accuracy of the geographic features or attributes. Please see the metadata records for each data set for complete information on the source, limitations, and proper use. Disclaimer- While every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by any errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty.

  4. How can I download or order the data?


Who wrote the metadata?

Dates:
Last modified: 18-Dec-2012
Metadata author:
National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Program
Biogeography Team Leader, Mapping Manager
1305 East West Highway
Silver Spring, MD 20910

301-713-3028 (voice)
301-713-4388 (FAX)
steve.rohmann@noaa.gov

Metadata standard:
FGDC Content Standard for Digital Geospatial Metadata (FGDC-STD-001-1998)


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