Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006, (NODC Accession 0012632)

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What does this data set describe?

Title:
Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006, (NODC Accession 0012632)
Abstract:
The Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006 data include biological and oceanographic measurements collected to satisfy the MMS and NOAA contracts 1435-01-02-CT-85088 and 1435-01-04-CT-33137 through the monitoring year 2006. The Flower Garden Banks are located in the northwest Gulf of Mexico and are unique within the region. The Flower Garden Banks are coral reefs with biological assemblages typical of Caribbean coral reefs, including approximately 23 Caribbean scleractinian coral species, a low abundance and diversity of sponges, and reef fishes. These data are the result of yearly monitoring events and are used for comparison purposes required to complete technical reports and presentations. Statistical analyses, photographs, and videography are not included in this submission. On the East and West Flower Garden Banks there are 100 m by 100m study sites within which monitoring is conducted every year. The data included in this submission are from these study sites and include the following: (1) random transect benthic cover data obtained using videography (2002-2006), still photographs (2002-2003) and linear point intercept observer data (2002-2003). Random transect data include the proportional cover of benthic components including coral species, sponges, algae, and other groups. (2) Sclerochronology data are taken during odd years to look at short-term (10 years) change in coral growth rates. (3) Photographs of marked Diploria strigosa colony margins are taken annually to track lateral growth or recession of colony margins over time. Data within this dataset start with comparisons between 2001 and 2002. (4) Repetitive 8m2 quadrat planimetry data follow specific coral colonies over time. Coral colonies are traced each year to measure lateral growth, loss, and/or replacement within a continuously monitored 8m2 area. Data within this dataset start with comparisons between 2001 and 2002. (5) Abiotic water quality parameters are recorded on a continual basis using YSI datasondes. Data include temperature, specific conductivity, dissolved oxygen concentration, dissolved oxygen charge, pressure, depth, pH, pHmV, par1, par2, turbidity, and salinity. Additionally, HoboTemp thermographs are used as a back-up to record temperature. On YSI datasonde changeout cruises water samples are taken at surface, mid-water and at the benthos for nutrient and cholorphyll analysis. (6) Fish population surveys are completed to monitor fish species abundance and size from year to year.
Supplemental_Information:
Biological Data includes corals, algae, and invertebrate data. Reef fish identified are listed below: East and West Flower Garden Banks Fish Species List 2005

Fish Species Fish Common Name Family Name Chaetodon striatus Banded butterflyfish Chaetodontidae Caranx ruber Bar jack Carangidae Sphyraena barracuda Barracuda, great Sphyraenidae Stegastes leucostictus Beaugregory Pomacentridae Stegastes partitus Bicolor damselfish Pomacentridae Melichthys niger Black durgon Balistidae Mycteroperca bonaci Black grouper Serranidae Caranx lugubris Black jack Carangidae Chromis cyanea Blue chromis Pomacentridae Acanthurus coeruleus Blue tang Acanthuridae Thalassoma bifasciatum Bluehead Labridae Chromis multilineata Brown chromis Pomacentridae Kyphosus sectator/incisor Chub, Bermuda/Yellow Kyphosidae Halichoeres maculipinna Clown wrasse Labridae Stegastes variabilis Cocoa damselfish Pomacentridae Clepticus parrae Creole wrasse Labridae Paranthias furcifer Creole-fish Serranidae Caranx hippos Crevalle jack Carangidae Acanthurus chirurgus Doctorfish Acanthuridae Lutjanus jocu Dog snapper Lutjanidae Stegastes dorsopunicans Dusky damselfish Pomacentridae Pomacanthus paru French angelfish Pomacanthidae Cephalopholis cruentata Graysby Serranidae Lactophrys polygonius Honeycomb cowfish Ostraciidae Caranx latus Horse-eye jack Carangidae Stegastes diencaeus Longfin damselfish Pomacentridae Chaetodon aculeatus Longsnout butterflyfish Chaetodontidae Holocentrus rufus Longspine squirrelfish Holocentridae Dermatolepis inermis Marbled grouper Serranidae Gobiosoma oceanops Neon goby Gobiidae Acanthurus bahianus Ocean surgeonfish Acanthuridae Canthidermis sufflamen Ocean triggerfish Balistidae Cantherhines pullus Orangespotted filefish Monocanthidae Diodon hystrix Porcupinefish Diodontidae Scarus taeniopterus Princess parrotfish Scaridae Halichoeres radiatus Puddingwife Labridae Chromis scotti Purple reeffish Pomacentridae Holacanthus ciliaris Queen angelfish Pomacanthidae Scarus vetula Queen parrotfish Scaridae Epinephelus morio Red grouper Serranidae Epinephelus guttatus Red hind Serranidae Sparisoma aurofrenatum Redband parrotfish Scaridae Sparisoma rubripinne Redfin parrotfish Scaridae Ophioblennius atlanticus Redlip blenny Blenniidae Amblycirrhitus pinos Redspotted hawkfish Cirrhitidae Sparisoma chrysopterum Redtail parrotfish Scaridae Chaetodon sedentarius Reef butterflyfish Chaetodontidae

East and West Flower Garden Banks Fish Species List 2005 Fish Species Fish Common Name Family Name Holacanthus tricolor Rock beauty Pomacanthidae Epinephelus adscensionis Rock hind Serranidae Parablennius marmoreus Seaweed blenny Blenniidae Abudefduf saxatilis Sergeant major Pomacentridae Canthigaster rostrata Sharpnose puffer Tetraodontidae Atherinidae Silversides Atherinidae Lactophrys triqueter Smooth trunkfish Ostraciidae Bodianus rufus Spanish hogfish Labridae Chaetodon ocellatus Spotfin butterflyfish Chaetodontidae Bodianus pulchellus Spotfin hogfish Labridae Equetus punctatus Spotted drum Sciaenidae Gymnothorax moringa Spotted moray Muraenidae Holocentrus adscensionis Squirrelfish Holocentridae Sparisoma viride Stoplight parrotfish Scaridae Scarus iseri Striped parrotfish Scaridae Chromis insolata Sunshinefish Pomacentridae Stegastes planifrons Threespot damselfish Pomacentridae Mycteroperca tigris Tiger grouper Serranidae Cantherhines macrocerus Whitespotted filefish Monocanthidae Liopropoma eukrines Wrasse bass Serranidae Mulloidichthys martinicus Yellow goatfish Mullidae Mycteroperca venenosa Yellowfin grouper Serranidae Halichoeres garnoti Yellowhead wrasse Labridae Mycteroperca interstitialis Yellowmouth grouper Serranidae Microspathodon chrysurus Yellowtail damselfish Pomacentridae

Resource Description: NODC Accession Number 0012632

  1. How might this data set be cited?
    PBS&J Corporation, for MMS and NOAA contracts 1435-01-02-CT-85088 and 1435-01-04-CT-33137 through the year 2006., 20060116, Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006, (NODC Accession 0012632): OCS Study MMS 2006-035, U.S. Dept. Commerce, NOAA National Oceanographic Data Center, Silver Spring, Maryland.

    Online Links:

    Other_Citation_Details:
    A final data report, OCS Study MMS 2006-035 Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary, 2002-2003 is available through the Minerals Management Service (MMS), Gulf of Mexico OCS Region on CD-ROM and via direct download as a .PDF file.
    This is part of the following larger work.

    Prepared under MMS Contract 1435-01-02-CT-85088 by PBS&J. Authors: William F. Precht, Richard B. Aronson, Kenneth J. P. Deslarzes, Martha L. Robbart, Thaddeus J. T. Murdoch, Adam Gelber, David J. Evans, Bob Gearheart, Beth Zimmer, 20060930, Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary, 2002-2003 Final Report: OCS Study MMS 2006-035, U.S. Dept. Of Interior, Minerals Management Service, Gulf of Mexico OCS Region, New Orleans, LA.

  2. What geographic area does the data set cover?
    West_Bounding_Coordinate: -93.815819
    East_Bounding_Coordinate: -93.596706
    North_Bounding_Coordinate: 27.909236
    South_Bounding_Coordinate: 27.874581
    Description_of_Geographic_Extent:
    The East Bank (27 54.5' N, 93 36.0' W) is located approximately 193 km southeast of Galveston, Texas. East Bank encompasses 67 km2, sloping from the shallowest point at 20 m to the terrigenous mud seafloor at a depth of 100-120 m. The eastern and southern edges of the bank slope steeply whereas the northern and western edges slope more gently. The West Bank (27 52.4' N, 93 48.8' W) is located 20 km west of East Bank, is located 172 km southeast of Galveston and is more than twice as large (137 km2) as the East Bank. The three peaks that comprise the East Bank are aligned along an east-west axis. The middle high rises from a depth of 100-150 m to within 18 m of the surface and supports coral reef habitat from 18 - 48 m.
  3. What does it look like?
  4. Does the data set describe conditions during a particular time period?
    Beginning_Date: 27-Oct-2002
    Ending_Date: 15-Jun-2006
    Currentness_Reference: ground condition
  5. What is the general form of this data set?
    Geospatial_Data_Presentation_Form: data files
  6. How does the data set represent geographic features?
    1. How are geographic features stored in the data set?
      Indirect_Spatial_Reference: NW Gulf of Mexico
    2. What coordinate system is used to represent geographic features?
  7. How does the data set describe geographic features?
  8. What biological taxa does this data set concern?
    Taxonomy:
    Keywords/Taxon:
    Taxonomic_Keyword_Thesaurus: CoRIS Theme Thesaurus
    Taxonomic_Keywords: EARTH SCIENCE > Biosphere > Vegetation > Algae
    Taxonomic_Keywords: EARTH SCIENCE > Biosphere > Zoology > Corals
    Taxonomic_Keywords: EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates
    Taxonomic_Keywords: EARTH SCIENCE > Oceans > Marine Biology > Fish > Fish Census
    Keywords/Taxon:
    Taxonomic_Keyword_Thesaurus: None
    Taxonomic_Keywords: Coral
    Taxonomic_Keywords: Montastraea sp.
    Taxonomic_Keywords: Diploria strigosa
    Taxonomic_Keywords: Sponges
    Taxonomic_Keywords: Algae
    Taxonomic_Keywords: Fish
    Taxonomic_Keywords: Reef fish
    Taxonomic_Keywords: Inverebrates
    Taxonomic_Keywords: Coralline algae
    Taxonomic_System:
    Classification_System/Authority:
    Classification_System_Citation:
    Citation_Information:
    Originator:
    ITIS organization and partners: U.S. Department of Agriculture; National Oceanic and Atmospheric Administration; U.S. Geological Survey; Smithsonian Institution; U.S. Environmental Protection Agency; National Biological Information Infrastructure; Agriculture and Agri-Food Canada; U.S. National Park Service; Conabio (Comisión nacional para el conocimiento y uso de la biodiversidad - Mexico)
    Publication_Date: 20020602
    Title: Integrated Taxonomic Information System (ITIS)
    Geospatial_Data_Presentation_Form: Database
    Publication_Information:
    Publication_Place: World Wide Web at URL: http://www.itis.usda.gov/itis_query.html
    Publisher:
    Integrated Taxonomic Information System (ITIS) organization and partners
    Classification_System_Modifications:
    A species list is provided in the original data files, but not all species were observed during the study. Only those species identified during the surveys are included in this metadata record. Higher level taxonomy of species was completed, and species synonyms were noted, FOR THIS METADATA RECORD ONLY at the NODC using the Integrated Taxonomic Information System (ITIS) in conjunction with additional taxonomic and museum references as required. No originator data has been altered at the NODC; higher level taxonomy is added at the NODC to selected biological metadata records as an aid to search engines which utilize metadata.
    Taxonomic_Procedures:
    GENERAL: From video, transect monitoring, and photography, corals were identified to species; sponges were combined into a single group; macroalgae were identified to species where possible and included anything longer than approximately 3 mm; crustose coralline algae turfs, fine turfs and bare rock were grouped as CTB. Reef fish and invertebrates identifed to genus and species when possible.

    FISH SURVEYS - Visual reef fish surveys were conducted on both East and West Banks. Size frequency distributions for two trophic guilds, herbivores and carnivores, were calculated as the proportion of the total number of herbivores or carnivores and represented as a percentage of individuals in the guild falling within different size categories (0-5 cm, 6-10 cm, 11-20 cm, 21-30 cm, 31-40 cm, and greater than 40 cm), based on average fish lengths recorded during the surveys. Parrotfishes (Scaridae), surgeonfishes (Acanthuridae), and yellowtail damselfish (Microspathodon chrysurus) comprised the herbivore guild, while snappers (Lutjanidae) and select groupers (Serranidae) comprised the demersal carnivore guild. The select groupers of the carnivore guild included yellowmouth grouper (Mycteroperca interstitialis), tiger grouper (M. tigris), graysby (Epinephelus cruentatus), and coney (E. fluvus) (Claro and Cantelar Ramos 2003; Pattengill- Semmens and Gittings 2003).

    INVERTEBRATES - The sea urchin Diadema antillarum and the spiny lobster Panulirus argus were identified and surveyed at night, at least 1.5 hours after sundown.

    Taxonomic_Completeness:
    To family, genus, and species; in-situ and photographic identification.
    General_Taxonomic_Coverage:
    Corals were identified to species; sponges were combined into a single group; macroalgae were identified to species where possible and included anything longer than approximately 3 mm; crustose coralline algae turfs, fine turfs and bare rock were grouped as CTB. Reef fish and invertebrates identifed to genus and species when possible.
    Taxonomic_Classification:
    Taxon_Rank_Name: Kingdom
    Taxon_Rank_Value: Animalia, Plantae, Monera

Who produced the data set?

  1. Who are the originators of the data set? (may include formal authors, digital compilers, and editors)
  2. Who also contributed to the data set?
    PBS&J Corporation: William F. Precht, Ken Deslarzes, Rich Aronson, Leslie Kaufman, Martha Robbart, Beth Zimmer, Melisa Reiter, Adam Gelber, Mark Henry, Bob Woithe, Marty Heaney, Leslie Duncan, David Evans, Leslie Whaylen, Dave Roberts, Ken Jones, Sue Wilcox, and Stacey Roberts, in fulfillment of MMS and NOAA contracts 1435-01-02-CT-85088 and 1435-01-04-CT-33137.
  3. To whom should users address questions about the data?
    Martha L. Robbart
    PBS&J Corporation
    unknown
    PBS&J 2001 NW 107th Ave
    Miami, Florida
    U.S.A.

    305-514-3328 (voice)
    305-592-9574 (FAX)
    mrobbart@pbsj.com
    Hours_of_Service: 9:00 AM - 5:00 PM, M-F
    Contact_Instructions:
    Phone/FAX/E-mail; Additional contact - William F. Precht, Chief Scientist, 305-926-4131

Why was the data set created?

The Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006 data include biological and oceanographic data collected to satisfy the MMS and NOAA contracts 1435-01-02-CT-85088 and 1435-01-04-CT-33137 through the year 2006. The purpose of these biological and oceanographic data is to serve as a long-term record of the conditions of the coral reef communities within the East and West Flower Garden Banks study sites. MMS and NOAA continue environmental monitoring for continuity of data and for generating information needed for resource management and regulatory decision-making. In addition, the monitoring data are needed to validate and sustain the present understanding of MMS lease stipulations for providing effective mitigation of impacts to the offshore environment.

How was the data set created?

  1. What methods were used to collect the data?
    Method 0 of 13
    Type: Field
    All data were collected within the established 100m x 100m site at East Bank and West Bank in October 2002 and August 2003, except for a set of deep repetitive quadrats at East Bank, which were established in April 2003. The general locations of the study sites are marked by permanent mooring buoys: FGBNMS permanent mooring number 2 at the East Bank (27 degrees 53' 35.80 N, 93 degrees 38' 23.90 W) and mooring number 5 at the West Bank (27 degrees 52' 50.86 N, 93 degrees 52' 25.34 W). Geographical Positioning System (GPS) positions taken of the site corners in 2002 allowed for quick site relocation and initial mapping of the four corners. Buoys were dropped from a launch to visually mark the corners from the surface and for quick location by divers. Divers used polypropylene lines to temporarily mark the perimeters of the study sites and the north/south and east/west center lines. Metal rods were previously installed in the reef to demarcate monitoring stations. There were two types of permanent monitoring stations: (1) lateral growth stations on Diploria strigosa colonies marked by two short rods per station, and (2) 8m2 repetitive quadrats, the centers of which were marked by a tall rod (0.5 m long). Due to the poor condition of many of the existing rods, a site-rehabilitation was conducted in April 2003. At the East Bank, 60 lateral growth station pins were installed, 48 of these were replacements for existing pins and 12 were new stations. At the West Bank, 60 lateral growth station pins were installed and 43 of these were replacement pins, while 17 were new station pins. Forty repetitive quadrat station pins were installed at the East Bank in April 2003 and 31 of these were replacements for existing pins. At the West Bank, 40 repetitive quadrat station pins were installed and 36 of these were replacement pins, while 4 new repetitive quadrat pins were installed. A new numbering system was assigned to the new rods. Eighty new repetitive quadrats (Station numbers 1-40 at East Bank and 41-80 at West Bank) and 120 new lateral growth stations (1-60 at East Bank, 61-120 at West Bank) were established. Additionally, in April 2003 nine deep repetitive quadrat stations (station numbers 81-89) were established at East Bank in 33-40 m water depth. Reference:
    Method 0 of 13
    Type: Field
    The first method in this study for estimating benthic coverage, still photography, involved using a Nikonos V camera equipped with a 28-mm lens and dual strobes, mounted on an aluminum framer, that allowed the camera lens to be 1.0 m above the substratum. The bottom of the framer was wrapped in foam to protect the reef from damage. Cameras were loaded with Kodak Ektachrome EliteChrome 200 ASA 36-exposure color slide film and set to f11 and a distance of 0.8 m. One strobe was set on TTL and the other on slave. Seventeen photographs were taken on the right side of the transect in a consecutive, non-overlapping fashion along each transect at each site. Earlier reports reported that each photograph captured 44 x 63 centimeters (cm) of the benthos (2772 cm2). Through visual assessment of the photographs in 2002 and 2003, we noted that the foam edge of the framer appeared along one or more edges of the photograph in some instances. With the framer measurements and information on the camera lens, we determined that each photograph in fact covered an area of 78 x 52 cm (4056 cm2) using the factory lens information from Nikonos. Since coral cover was calculated as percent cover, a relative measure, this did not affect results except for the total area surveyed. Reference:
    Method 0 of 13
    Type: Field
    In the videographic protocol, a diver swam slowly along each transect, videotaping at a height of 40 cm from the substratum, using a digital video camera in an underwater housing fitted with a wide-angle lens and underwater video lights. A depth gauge and scaling bar were attached to an aluminum bar that projected forward from the video housing. The gauge and bar ensured that the camera remained a constant distance from the bottom. By holding the video camera perpendicular to the substratum and swimming slowly along the transect it was possible to produce clear stop-action images for analysis (Aronson et al. 1994; Murdoch and Aronson 1999).

    The video frames covered a 40-cm wide swath along each of the 10-m transects, for a total area of 4 m2 per transect, or 56 m2 videotaped per site per year. Each video frame was 40 x 27 cm, or 1080 cm2. These dimensions were smaller than those of the still photographs. The reason for the difference is that the videographic technique is designed to enable investigators to identify corals and many other sessile invertebrates to species down to a colony size of approximately 3 cm. This level of precision is not currently possible using video frames that record larger areas of the substratum. Data from the digital videotapes were collected and analyzed according to the Murdoch Automated Video Analysis method, as follows. A set of 42 video frames was captured from each video transect using a Macintosh PowerBook G4 with the software Adobe Photoshop version 6.02 and the PhotoDV image capture plug-in software produced by Radius. The time taken to film each transect was measured and divided into 42 equal time divisions and rounded down to the nearest 1/60th second time interval. Once the software captured each set of frames for each transect, a series of digital filters was applied to each image to enhance image quality. Substrate cover was assessed from the 20 evenly numbered, non-overlapping frames from the set of 42 images. Odd-numbered frames were intentionally captured so as to overlap even-numbered frames. Odd frames were only used to allow the researcher to obtain an alternate view of the area around objects in the analyzed frames when objects were obstructed or unclear in the even frames. Otherwise, oddnumbered frames were not used in the analysis. Unused odd frames were deleted from the digital image set after analysis.

    After image capture and enhancement, the image frames from each site had an image of a randomly placed set of 25 dots added as a separate layer. In the 2002 analysis the dot images added to the captured video frames were selected at random from a previously produced batch of 100 random-dot images. A program developed by Murdoch automatically carried out the process of randomly selecting each image of random dots and placing it on each frame of the entire data-set for each reef site. In 2003, unique random-dot images were generated and pasted automatically to each video frame after capture using a new program. After random-dot placement the image files from each transect were visually assessed and the data entered into project-specific Microsoft Excel spreadsheets.

    Method 0 of 13
    Type: Field
    The third method of assessment, visual estimation, consisted of a diver swimming along each transect, recording the substratum component underlying each 10-cm mark along the tape, for a total of 100 points recorded per transect. The linear point-intercept (LPI) method has proven effective at estimating areal coverage of benthic components on coral reefs, particularly where the diversity of corals and other taxa is low (Ohlhorst et al. 1988; Rogers et al. 1994; Aronson and Precht 1995, 1997), as it is at the FGB. Each transect was treated as a replicate at the scale of the study site, yielding an estimate of coral cover and the cover of other benthic categories. Percent covers were calculated for each transect from the resulting set of 500 points. Data were collected on the point-counts of each coral species; sponges as a group; macroalgae to species; turf (greater than 3 mm), fine turf, crustose coralline algae and bare rock as a single category, CTB; and sand and other inanimate categories of substrate. Graphs were produced to allow the comparison of each reef in the average percent cover of major substrate types, coral species, coral functional types and algal functional types. Previous examination of means and variances, using different numbers of random dots, suggested that 500 dots per transect provide accurate and precise estimates of the coverage of benthic components, regardless of the length of the transects (Aronson et al. 1994; Carleton and Done 1995). Reference:
    Method 0 of 13
    Type: Field
    Sclerochronology is the determination of annual growth rates through the measurement of accretionary growth bands in coral core samples taken perpendicular to coral growth. Four cores were extracted from Montastraea faveolata colonies at each bank during the 2003 monitoring cruise. A SCUBA tank-powered pneumatic drill, fitted with a diamond tipped 7.62-cm lapidary bit, was used to extract cores from the center of large M. faveolata heads. Cores were 30 millimeters (mm) in diameter and 50 mm long, providing seven years of growth. The hole left from core extraction was filled with a preformed limestone plug inscribed with the date of core extraction Reference:
    Method 0 of 13
    Type: Lab
    Cores were longitudinally sectioned into 3- to 4-mm thick slabs using a single-blade diamond impregnated rock saw. Coral slabs were arranged on Kodak brand Industrix 400 x-ray film and exposed to x-rays (70kV 15ma with an exposure time of 7 sec) to reveal annual density bands. Growth of the Montastraea faveolata colonies sampled was determined directly by measuring distances from high density to high density band. Three measurements were made along a single growth band and averaged for an estimate of growth rate per year. Reference:
    Method 0 of 13
    Type: Field
    Diploria strigosa is the second largest contributor to coral cover at the FGB (Bright et al. 1984). For this reason D. strigosa lateral growth margins are monitored to detect changes, either as retreat or growth of margins. In 2002, 54 and 43 lateral growth stations were photographed at the East Bank and West Bank, respectively. During the site rehabilitation cruise in April 2003 sixty lateral growth stations were refurbished and/or installed on each bank. At the East Bank 12 new stations were established and 48 old lateral growth stations were refurbished with new pins and tags, for a total of 60 lateral growth stations, numbered 1-60. At the West Bank 17 new stations were installed, while 43 old lateral growth station pins were refurbished with new pins and tags, for a total of 60 new lateral growth stations, numbered 60-120. Divers tagged and photographed all lateral growth stations that they saw in August 2003, even if they did not have a new tag, therefore the number of photographed lateral growth stations exceeded 60 at each bank in 2003, and included new stations, refurbished stations as well as old untagged stations. Sixty-two colonies of Diploria strigosa on East Bank and 64 colonies on West Bank were photographed to assess coral margin growth rates in August 2003. Divers were equipped with a Nikonos V camera with a 28 mm lens (underwater application, 144x216 mm field, 1/6 reproduction ratio), Nikonos close-up kit and strobe. The camera was set at f22 and a distance of infinity, and the strobe set to TTL. This produced 13.3 x 19.7-cm (262.01-cm2) photographic images. The framer was placed on corner pins at each station, ensuring a repeated image of the station. Many stations had missing station identification tags. Those stations that did have tags were photographed with the tag in the frame. For stations without tags, the current photographs were matched with past photographs using the ridge patterns of the Diploria colonies. Reference:
    Method 0 of 13
    Type: Field
    To monitor changes in coral reef community structure, repetitive 8m2 quadrats were photographed and analyzed in two ways. The first method of analysis measured percent benthic cover components in 2002 and 2003 using random dot analysis. To determine whether specific coral colonies grew or lost tissue laterally, selected corals within repetitive quadrats were analyzed using planimetry to measure growth or loss of tissue of available matches between 2001, 2002, and 2003. Due to the variability from year to year in photographs, dominant frame building corals that predominate the FGB (Montastraea spp., Diploria strigosa, Colpophyllia natans) were selected based on their visible margins, these corals tended to be closer to the center of the photograph. In 2002, 31 and 34 repetitive quadrat stations were photographed at East Bank and West Bank respectively. In April 2003 during the site-rehabilitation cruise pins and tags were refurbished for established repetitive quadrat stations, as well as the installation of new stations to return the sample size to 40 repetitive quadrats at each bank. At the East Bank thirty-one existing repetitive quadrat stations were refurbished and 9 new stations were installed, for a total of 40 repetitive quadrat stations, numbered 1-40. At the West Bank thirty-six stations were refurbished and 4 new stations were installed, for a total of 40 repetitive quadrat stations, numbered 40-80. Because divers tagged and photographed all repetitive quadrat stations they saw, whether they had a new tag or not, the number of stations photographed in 2003 exceeded 40 at each bank, these included refurbished stations, old non-refurbished stations and newly established stations. In 2003, 41 and 44 repetitive quadrats were photographed at East Bank and West Bank, to track changes of 8m2 repetitive quadrats over time. Twenty image pairs for the East Bank and 31 image pairs for the West Bank were analyzed between 2002-2003. Less than forty quadrats were analyzed at each bank because the rehabilitation cruise replaced old pins as well as establishing new pins, therefore the same 40 repetitive quadrats were not necessarily photographed between 2002 and 2003. The rehabilitation cruise has corrected this for future analysis. Stations were photographed using a T-bar camera frame with a Nikonos V camera mounted in the middle, loaded with Kodak Ektachrome EliteChrome 200 ASA, 36-exposure slide film and a 15mm lens (distance equals 2m, f-stop equals 8). Two Ikelite 225 watt-second strobes were mounted on the ends of the T-bar and set on TTL and slave (Gittings et al. 1992). The camera was positioned in a due north direction to ensure repetitive photographs from year to year. The consistent orientation of the camera was achieved with a compass and a bubble level. Nine additional deep stations at 32-40 m depth were established at East Bank by MMS and NOAA in April 2003 and photographed in August 2003 using the technique described above. The first comparison data will be available in 2005. The deep repetitive quadrat pins were mapped in relation to each other and in relation to the U-bolt at the base of FGBNMS mooring number 2, for ease of location. Depths were recorded for each pin, while distances were not measured and remain relative. Reference:
    Method 0 of 13
    Type: Field
    Perimeter lines were videotaped each year to document change at known locations along the perimeter and within the study site. A general sense of coral condition and fish populations is obtained and compared year to year. Divers videotaped two 100 m segments of the perimeter lines at the East (north and east) and West Bank (south and west) in 2002 and 2003. At the East Bank, divers started at the NW corner and videotaped the north line to the NE corner, then swam the east line to the SE corner. At the West Bank, divers captured footage of the south and west lines, starting at the SE corner and ending at the NW corner. The videographer maintained approximately 2 m distance above the benthos using a weighted line, attached to the video housing. The camera was held at a 45 degree angle to capture the substratum. At each corner divers recorded a 360 degree panoramic view of the reef before continuing on to video the line. The video footage was reviewed to record the general condition of coral health and fish populations along the perimeter of the study sites using IMovie (Macintosh software). Individual coral heads displaying disease, bleaching, paling, and tissue loss due to fish biting were identified and recorded. Analysis categories were as follows: bleaching, paling, healthy colony, concentrated fish biting, isolated fish biting (damselfish territory), increased tissue loss due to concentrated fish biting, increased tissue loss due isolated fish biting, growth infilling (tissue regrowth), new incident of concentrated fish biting, surface replaced by turf algae, and unchanged. Concentrated fish biting (CFB) is the concentrated biting which removes the coral polyps completely from an affected area, and may be due to activity of the parrotfish, Sparisoma viride. Isolated fish biting describes less dense and smaller scale fish biting, typically representative of damselfish territories. No disease was documented and therefore was not characterized. Affected coral colonies were compared between 2002 and 2003, and changes in their condition were recorded. In addition, coral species composition and fish counts were documented. These analyses were qualitative and therefore no statistical analyses were conducted. Reference:
    Method 0 of 13
    Type: Field
    Physical and chemical characteristics of the seawater recorded over the reef cap and in the vicinity of the FGB characterize local water quality (Gittings et al. 1992; CSA 1996; Nowlin et al. 1998; Dokken et al. 1999; Dokken et al. 2003; this study). From October 2002 to March 2004, the water quality overlying the reef caps at the FGB was assessed by monitoring temperature, salinity, dissolved oxygen, pH, turbidity, and content in chlorophyll a, dissolved inorganic nitrogen (ammonia [NH4+ and NH3], nitrate [NO3 -], and nitrite [NO2-]), dissolved organic nitrogen (Total Kjeldahl Nitrogen [TKN]), inorganic phosphorous (soluble reactive phosphorous, a soluble inorganic form of phosphorous directly taken up by plant cells), and trace metals (chromium, mercury). These water quality parameters were selected to characterize the environmental background in which the FGB coral reef resources exist. As well as serving as a valuable record of environmental parameters, any changes in coral reef biota which may be linked to water quality changes, could be verified by looking at the water quality data. Reference:
    Method 0 of 13
    Type: Field
    Reef-fish surveys were conducted in October of 2002 and August of 2003. Fishes were visually assessed using SCUBA and a stationary visual census technique (Bohnsack and Bannerot 1986). Observations of fishes were restricted to an imaginary cylinder with a radius and height of 7.5 m from the diver. All fish species observed within the first five minutes of the survey were recorded. Immediately following, additional time was used to record abundance (number of individuals per species) and total length (cm) (minimum, maximum, and average) of those species noted in the first five minutes. Surveys lasted from 10 to 15 minutes. When necessary, species identifications were verified using Humann (1994) and Humann and DeLoach (2002). Depth, visibility, temperature, and survey location were also recorded. An average of 16 surveys each were performed at East and West Banks in 2002 and 2003. The fewest surveys (14) occurred at the East Bank in year two. Survey dives began in the early morning, before other dive activities were started, generally between 0700 and 0900, and were repeated by two to three divers throughout the day until dusk. Two days were spent surveying each bank, except at the West Bank in year one (2002), in which all 16 surveys were completed in one day. Individual survey locations were spread evenly within the 100m x 100-m study site to achieve maximum coverage of the reef habitat while excluding sand patches. The visibility for all surveys was greater than 10 m, with 25 to 30 m being most common in year one and 20 m being the average in year two. Survey depths ranged from 19 to 25 m at the West Bank and 16 to 23 m at the East Bank. Fish densities are expressed as the number of fish per 100-m2 horizontal area. For each bank and year, densities were calculated as the mean number of individuals recorded per species, with each diver survey acting as a replicate, divided by the horizontal area of the survey cylinder (176.7 m2). Relative abundance for each species is expressed as the percentage of the total number of times the species was recorded out of the total number of surveys for the site (bank and year). Species richness is the expression of the total number of species for each site (bank and year). Size frequency distributions for two trophic guilds, herbivores and carnivores, were calculated as the proportion of the total number of herbivores or carnivores and represented as a percentage of individuals in the guild falling within different size categories (0-5 cm, 6-10 cm, 11-20 cm, 21-30 cm, 31-40 cm, and greater than 40 cm), based on average fish lengths recorded during the surveys. Parrotfishes (Scaridae), surgeonfishes (Acanthuridae), and yellowtail damselfish (Microspathodon chrysurus) comprised the herbivore guild, while snappers (Lutjanidae) and select groupers (Serranidae) comprised the demersal carnivore guild. The select groupers of the carnivore guild included yellowmouth grouper (Mycteroperca interstitialis), tiger grouper (M. tigris), graysby (Epinephelus cruentatus), and coney (E. fluvus) (Claro and Cantelar Ramos 2003; Pattengill-Semmens and Gittings 2003). Reference:
    Method 0 of 13
    Type: Field
    The sea urchin Diadema antillarum and the spiny lobster Panulirus argus were surveyed at night, at least 1.5 hours after sundown. Two belt transects were surveyed along the northern and western boundaries in 2002 and the southern and eastern boundaries in 2003 at the East and West Bank. Each belt transect was 100 m long and 1 meter wide for a total of 200 m2 surveyed along site boundaries each year. Additional sea urchin and spiny lobster surveys were conducted along the 14 random transects (140 m2), for a total of 340 m2 surveyed per bank per year. Reference:
    Method 0 of 13
    Type: Field
    Accurate maps showing individual coral heads and sand patches of the FGB monitoring sites were deemed necessary for use in the field as well as for long-term analysis. Once a more detailed and accurate map is established the individual station markers (repetitive quadrat and lateral growth stations) can be georeferenced using GPS. Two mapping techniques, sector-scan and side-scan sonar were tested to produce the best quality map of the study sites at FGB. Sector-scan sonar relies on a mechanically rotated transducer, mounted on a tripod at a fixed position above the seabed, to produce an acoustic image of an area surrounding the sensor. Side-scan sonar involves towing a sensor (towfish) behind a moving boat. The towfish contains two transducers, which scan opposite sides of the towfish path through the water column. Sector-scan sonar was deployed only at East Bank in August 2003. The MS1000 sonar (Kongsberg Simrad Mesotech, Ltd.), and the MS1000 acquisition software were employed and sonar images displayed on the computer screen in a radial pattern, resembling radar. The software stored images as bitmaps, so image quality adjustments were made prior to capturing the screen display. Resolution was dependent upon the scan speed selected in the acquisition software and on the physical specifications of the sonar head. The slowest scan speed (X1) correlated with the highest screen resolution and was used for data acquisition at East Bank. A model 1071-series high-resolution sonar head (P/N 974-23030000), was deployed at the East Bank. This transducer operated at an acoustic frequency of 675 kHz and rotated mechanically at intervals of 0.225 degrees. It has a horizontal beam width of 0.9 degrees and a vertical beam width of 30 degrees. The MS1000 data acquisition software was set to image the seabed out to a range of 40 m from the transducer, so the entire East Bank study site could be recorded by four overlapping scans. A full rotation of the transducer lasted 1.5 minutes. At this range each screen pixel represents a geographic area measuring 0.17 by 0.17 m; however, the circumferential resolution ranges from 0.17 (equivalent to the beam width at a range of 10.8 m) to 0.63 m at the maximum range of 40 m. This resulted in resolution degradation beyond a range of 10.8 m. The transducer head was deployed at an approximate height of 2.1-2.4 m above the seabed using an aluminum tripod with adjustable legs. Two divers deployed the tripod using a lift bag for assistance. Tripod legs were padded to minimize damage to substratum. The tripod was positioned near the center of each study quadrant prior to recording each series of scans. The tripod was oriented using a magnetic compass so that the top of each image would be directed toward magnetic north. Diver air bubbles marked the location of the nearest study site corner pin as quadrants were scanned, since the geographic positions of these corners had been previously mapped using GPS. Knowing the orientation of each image and having one known geographic location marked in each image would allow scans to be overlaid on the study area boundary. Balloons were partially inflated by divers and suspended above each monitoring pin prior to recording images. Since air produces strong acoustic reflections, it was hypothesized that these balloons would be visible in the images against the background of coral, revealing the exact position of markers (repetitive quadrat pins). Side-scan sonar was used to map both East Bank and West Bank. The side-scan towfish (Edgetech DF1000) operated at a frequency of 500 kHz, with a horizontal beam width of 0.5 degrees and a vertical beam width of 50 degrees tilted down 20 degrees from horizontal. The DF1000 sampled an analogue signal and transmitted a digital data stream through the tow cable. This process eliminated signal attenuation due to the length of the cable and reduced disruption by electrical noise on board the survey vessel. The towfish was deployed from a 50 m length of cable off the starboard stern. The towpoint at the stern was locating 2.5 m above the water and 13.4 m directly aft of the GPS antenna. The horizontal layback distance of the towfish behind the stern varied with vessel speed from 47.9 to 48.9 m, averaging 48.4 m, as the towfish ranged in depth beneath the surface from about 8 to 12 m. Reference:
  2. From what previous works were the data drawn?
  3. How were the data generated, processed, and modified?
    Date: 30-Sep-2006 (process 1 of 1)
    Detailed analyses processes are described in Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006 Final Report, included as a .PDF file as part of this data set under NODC Accession 0012632. See complete citation in the CROSS-REFERENCE section of this metdata record. Person who carried out this activity:
    Martha L. Robbart
    PBS&J Corporation
    unknown
    PBS&J 2001 NW 107th Ave
    Miami, Florida
    U.S.A.

    305-514-3328 (voice)
    305-592-9574 (FAX)
    mrobbart@pbsj.com
    Hours_of_Service: 9:00 AM - 5:00 PM, M-F
    Contact_Instructions:
    Phone/FAX/E-mail; Additional contact - William F. Precht, Chief Scientist, 305-926-4131
  4. What similar or related data should the user be aware of?
    Prepared under MMS Contract 1435-01-02-CT-85088 by PBS&J. Authors: William F. Precht, Richard B. Aronson, Kenneth J. P. Deslarzes, Martha L. Robbart, Thaddeus J. T. Murdoch, Adam Gelber, David J. Evans, Bob Gearheart, Beth Zimmer, 20060930, Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary, 2002-2003 Final Report: OCS Study MMS 2006-035, U.S. Dept. Of Interior, Minerals Management Service, Gulf of Mexico OCS Region, New Orleans, LA.

    Online Links:


How reliable are the data; what problems remain in the data set?

  1. How well have the observations been checked?
  2. How accurate are the geographic locations?
  3. How accurate are the heights or depths?
  4. Where are the gaps in the data? What is missing?
    See: Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006 Final Report. See complete citation in the CROSS-REFERENCE section of this metdata record for detailed descriptions of data completeness.

    Monitoring cruises were conducted aboard the M.V. Fling in October 2002, and April and August 2003. The general locations of the study sites are marked by permanent mooring buoys: FGBNMS permanent mooring number 2 at the East Bank and mooring number 5 at the West Bank. Subsurface buoys were installed at the corners of the 100m x 100m study sites at each bank to facilitate underwater relocation. Establishment of the perimeter and crosshairs subdivided each study site into four quadrants. To estimate the areal coverage of benthic components, fourteen, 10-m long transect tapes were randomly positioned at each study site. Coverage was estimated from these transects in three ways: still photography, videography, and visual assessment in the field. The linear-point intercept (LPI) method was used as well, to ascertain whether data recorded directly on the reef was different than data derived from either of the photographic methods. Four coral cores were extracted from Montastraea faveolata colonies at each bank in order to determine annual growth rates and any possible indicators of past coral bleaching events or other stressors. Diploria strigosa is the second largest contributor to coral cover at the FGB. For this reason D. strigosa lateral growth margins were monitored and photographed to detect changes, either as retreat or growth of margins, from year to year. Repetitive 8m2 quadrats were photographed and analyzed using random dot analysis (percent cover of species and coral condition) and planimetry (measure growth or loss of tissue over time) in order to monitor changes in coral reef community structure. Perimeter lines were videotaped each year to document change at known locations along the perimeter and within the study site. A general sense of coral condition and fish populations were obtained and compared from year to year. Physical and chemical characteristics of the seawater overlying the reef caps at the FGB were assessed by monitoring temperature, salinity, dissolved oxygen, pH, turbidity, and content in chlorophyll a, dissolved inorganic nitrogen, dissolved organic nitrogen, inorganic phosphorous, and trace metals. These water quality parameters were selected to characterize the environmental background in which the FGB coral reef resources exist. Surveys of fish assemblages were conducted at each bank in order to determine relative abundance and diversity of species. Surveys of sea urchins and lobsters were performed at night to determine abundance and distribution of populations.

    As repetitive quadrat and lateral growth (Diploria strigosa) stations were missing markers, displaced, or otherwise degraded in 2002, a site rehabilitation cruise was completed in April 2003. The goal of this cruise was to reestablish the initial sample size of forty repetitive quadrat stations and sixty lateral growth stations on the East and West Banks. A new numbering system was established and old stations were refurbished with new pins and tags, while a small number of new stations were established at each bank. Since the majority of stations were refurbished, the long-term dataset should not be affected for either the repetitive quadrat or lateral growth stations.

  5. How consistent are the relationships among the observations, including topology?
    From: Long-Term Monitoring at the East and West Flower Garden Banks National Marine Sanctuary 2002-2006 Final Report. See complete citation in the CROSS-REFERENCE section of this metdata record.

    TRANSECT ANALYSES: Each transect was treated as a replicate at the scale of the study site, yielding an estimate of coral cover and the cover of other benthic categories. Percent covers were calculated for each transect from the resulting set of 500 points. Data were collected on the point-counts of each coral species; sponges as a group; macroalgae to species; turf (greater than 3 mm), fine turf, crustose coralline algae and bare rock as a single category, CTB; and sand and other inanimate categories of substrate. Graphs were produced to allow the comparison of each reef in the average percent cover of major substrate types, coral species, coral functional types and algal functional types. Previous examination of means and variances, using different numbers of random dots, suggested that 500 dots per transect provide accurate and precise estimates of the coverage of benthic components, regardless of the length of the transects (Aronson et al. 1994; Carleton and Done 1995). Analyses of Variance (ANOVAs) were performed to test the null hypothesis that the two reefs did not differ in each type of univariate substratum cover. After tests for normality and homogeneity ANOVAs were calculated for each substratum variable with the statistical software Systat 5.0., only the data on macroalgae had to be transformed, using the arcsine transformation. Multivariate statistical techniques were used to compare how the two banks differed in coral species composition using the software package PRIMER 5.0.

    To place the data on coral cover in a regional context, we analyzed the species-specific coral cover data using multidimensional scaling (MDS). We pooled the species-specific point-count data for hard corals from the 14 transects from each survey at a site in one


How can someone get a copy of the data set?

Are there legal restrictions on access or use of the data?
Access_Constraints: None
Use_Constraints:
Dataset credit required. NOAA and NODC would appreciate recognition as the resource from which these data were obtained in any publications and/or other representations of these data.
  1. Who distributes the data set? (Distributor 1 of 1)
    NOAA National Oceanographic Data Center
    Attn: NODC User Services
    not applicable
    SSMC3, 4th Floor, E/OC1 1315 East-West Highway
    Silver Spring, MD
    U.S.A

    301-713-3277 or 301-713-3280 (voice)
    301-713-3301 (FAX)
    nodc.services@noaa.gov
    Hours_of_Service: 8:00 - 6:00 PM, EST
    Contact_Instructions: Phone/FAX/E-mail/letter during business hours
  2. What's the catalog number I need to order this data set? Downloadable Data
  3. What legal disclaimers am I supposed to read?
    NOAA makes no warranty regarding these data, expressed or implied, nor does the fact of distribution constitute such a warranty. NOAA and NODC cannot assume liability for any damages caused by any errors or omissions in these data, nor as a result of the failure of these data to function on a particular system.
  4. How can I download or order the data?
  5. Is there some other way to get the data?
    Contact the NODC User Services Group phone/FAX/e-mail at: nodc.services@noaa.gov
  6. What hardware or software do I need in order to use the data set?
    Ability to import/utilize space-delimited ASCII files; .PDF documentation

Who wrote the metadata?

Dates:
Last modified: 30-Aug-2023
Metadata author:
Sheri Phillips
NOAA/NODC
Oceanographer
1315 East-West Highway, E/OC1, SSMC3, 4th Floor
Silver Spring, MD
U.S.A.

301-713-3280 x127 (voice)
301-713-3302 (FAX)
sheri.phillips@noaa.gov
Hours_of_Service: 9:30 AM - 6 PM Monday-Thursday
Contact_Instructions: E-mail, phone, FAX, mail
Metadata standard:
FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata (FGDC-STD-001.1-1999)

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