CRED REA Coral Health and Disease Assessment at Johnston Atoll, Pacific Remote Island Areas in 2008

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Frequently anticipated questions:


What does this data set describe?

Title:
CRED REA Coral Health and Disease Assessment at Johnston Atoll, Pacific Remote Island Areas in 2008
Abstract:
Coral health and disease assessments were conducted along 2 consecutively placed 25-m transects, as part of Rapid Ecological Assessments conducted at 6 sites at Johnston Atoll in the Pacific Remote Island Areas (PRIAs) from 24 January to 14 February 2008, aboard the NOAA ship Hi'ialakai, during the Reef Assessment and Monitoring Program (RAMP) Cruise HI0801. Within an area of 1-3m on each side of both transect lines, each colony was inspected and every diseased/afflicted coral enumerated and identified to the lowest taxonomic level. Raw data included: 1) area surveyed, 2) colony size, 3) taxon identification, 4) type of disease/lesion 5) percent live/dead tissue, 6) severity, 7) lesion distribution, and 8) photographic record. Tissue samples of selected cases were procured for histopathological analyses. These data provide the basis for computing quantitative estimates of disease incidence and prevalence. Samples and photographs provide aid in further disease characterization and description. Histological tissue samples are traditionally fixed in a formaldehyde solution prior to preparation for processing and analysis.
Supplemental_Information:
Maximum depth was 16 meters. Corals and disease observed: Disease Taxon Bleaching Montipora sp Discoloration Montipora sp Skeletal growth anomaly Montipora sp Whyte syndrom Acropora cytherea
  1. How might this data set be cited?
    Coral Reef Ecosystem Division (CRED), Pacific Islands Fisheries Science Center (PIFSC), National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA), 20100215, CRED REA Coral Health and Disease Assessment at Johnston Atoll, Pacific Remote Island Areas in 2008.

    Online Links:

  2. What geographic area does the data set cover?
    West_Bounding_Coordinate: -169.571385
    East_Bounding_Coordinate: -169.33355
    North_Bounding_Coordinate: 16.803112
    South_Bounding_Coordinate: 16.642373
  3. What does it look like?
  4. Does the data set describe conditions during a particular time period?
    Beginning_Date: 27-Jan-2008
    Ending_Date: 01-Feb-2008
    Currentness_Reference: Ground condition
  5. What is the general form of this data set?
    Geospatial_Data_Presentation_Form: spreadsheet
  6. How does the data set represent geographic features?
    1. How are geographic features stored in the data set?
    2. What coordinate system is used to represent geographic features?
      Horizontal positions are specified in geographic coordinates, that is, latitude and longitude. Latitudes are given to the nearest 0.0001. Longitudes are given to the nearest 0.0001. Latitude and longitude values are specified in Decimal Degrees. The horizontal datum used is World Geodetic System 1984 (WGS84).
      The ellipsoid used is Geodetic Reference System 80 (GRS80).
      The semi-major axis of the ellipsoid used is 6378137.
      The flattening of the ellipsoid used is 1/298.2572236.
      Vertical_Coordinate_System_Definition:
      Depth_System_Definition:
      Depth_Datum_Name: Local surface
      Depth_Resolution: 1
      Depth_Distance_Units: meters
      Depth_Encoding_Method: Explicit Depth Coordinate Included with Horizontal Coordinates
  7. How does the data set describe geographic features?

Who produced the data set?

  1. Who are the originators of the data set? (may include formal authors, digital compilers, and editors)
  2. Who also contributed to the data set?
    Bernardo Vargas-Angel, Coral Reef Ecosystem Division (CRED), Pacific Island Fisheries Sciences Center, National Marine Fisheries Service, NOAA
  3. To whom should users address questions about the data?
    Coral Reef Ecosystem Division (CRED), Pacific Islands Fisheries Science Center (PIFSC), National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA)
    Attn: Dr. Bernardo Vargas-Angel
    NOAA IRC
    Honolulu, HI
    USA

    808 725-5360 (voice)
    808 725-5429 (FAX)
    nmfs.pic.credinfo@noaa.gov
    Contact_Instructions: e-mail preferred

Why was the data set created?

Part of a long-term monitoring program at biennial intervals in which corals, algae, fish, and other macroinvertebrates are co-sampled along the same set of transect lines.

How was the data set created?

  1. From what previous works were the data drawn?
  2. How were the data generated, processed, and modified?
    Date: Unknown (process 1 of 1)
    As a diver swam along the transect line, he inspected an area of 1-3m on each side of the transect lines along which each coral was inspected and every diseased colony identified to the lowest taxonomic and type of affliction recorded.
  3. What similar or related data should the user be aware of?

How reliable are the data; what problems remain in the data set?

  1. How well have the observations been checked?
    Observations were made by a single diver who is an expert in coral diseases. The disease assessment surveys are conducted one time per site per survey year; it is not replicated.
  2. How accurate are the geographic locations?
    GPS unit
  3. How accurate are the heights or depths?
    Dive computer and SCUBA depth gauge
  4. Where are the gaps in the data? What is missing?
    The survey sites were selected to be representative of the dominant habitats at this reef system. The majority of surveys were conducted in the lagoon due to inclement sea conditions in other habitats.
  5. How consistent are the relationships among the observations, including topology?
    The same methods of data collection were used at each of the sites surveyed at this location, and were conducted by the same scientist (Bernardo Vargas-Angel).

How can someone get a copy of the data set?

Are there legal restrictions on access or use of the data?
Access_Constraints: Data are available two years following data collection date
Use_Constraints:
Please cite CRED when using the data. Coral Reef Ecosystem Division, Pacific Islands Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration
  1. Who distributes the data set? (Distributor 1 of 1)
    Coral Reef Ecosystem Division (CRED), Pacific Islands Fisheries Science Center (PIFSC), National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA)
    Attn: CRED Data Management Team
    NOAA IRC
    Honolulu, HI
    USA

    808 725-5360 (voice)
    808 725-5429 (FAX)
    nmfs.pic.credinfo@noaa.gov
    Contact_Instructions: e-mail preferred
  2. What's the catalog number I need to order this data set? Offline Data
  3. What legal disclaimers am I supposed to read?
    While every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty.
  4. How can I download or order the data?
  5. Is there some other way to get the data?
    Contact CRED data management team for information
  6. What hardware or software do I need in order to use the data set?
    Contact CRED data management team for information

Who wrote the metadata?

Dates:
Last modified: 05-Jun-2019
Last Reviewed: 16-Sep-2008
Metadata author:
Coral Reef Ecosystem Division (CRED), Pacific Islands Fisheries Science Center (PIFSC), National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA)
NOAA IRC
Honolulu, HI
USA

808 725-5360 (voice)
808 725-5429 (FAX)
nmfs.pic.credinfo@noaa.gov
Contact_Instructions: e-mail preferred
Metadata standard:
Content Standard for Digital Geospatial Metadata (FGDC-STD-001-1998)

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